USDA_SNP0147, USDA_SNP0147 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0147
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:60310795..60310857 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:104104972..104105034 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:8422844..8422906 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:46520438..46520500 +Gossypioides kirkii genome ISU_v3n/a
KI_11chromosomeKI_11:31991778..31991840 +Gossypioides kirkii genome ISU_v3n/a
KI_11chromosomeKI_11:46530035..46530098 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:12762338..12762400 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016624.1chromosomeCM016624.1:130328776..130328838 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr1chromosomeAt_chr1:6026392..6026454 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold165.1supercontigscaffold165.1:198047..198109 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:58411083..58411145 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:83839077..83839139 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:63019049..63019111 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:113117630..113117692 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:62246702..62246764 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:111606687..111606749 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:62950003..62950065 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:109180031..109180093 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:60250242..60250304 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:105962182..105962244 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:59770889..59770951 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:102509610..102509672 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:62766517..62766579 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:105638719..105638781 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:62243378..62243440 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:109491096..109491158 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:63783622..63783684 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:59865406..59865468 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:104595582..104595644 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:62822262..62822324 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:113900084..113900146 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:118061149..118061211 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:116291340..116291402 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:6730436..6730498 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr07chromosomechr07:43489759..43489821 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:40958822..40958884 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:36949343..36949404 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:39409999..39410060 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:101762963..101763025 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr11chromosomeChr11:13472882..13472944 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeChr11:13416075..13416137 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0147 ID=USDA_SNP0147; Name=USDA_SNP0147; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGT[C/G]AAGGAGTGGAACATCATAAGAACAGCCCAATGCTCAATC
AAGTCAGAAGCAGAACC