USDA_SNP0146, USDA_SNP0146 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0146
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018207.1chromosomeCM018207.1:2834203..2834266 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:2555523..2555586 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016619.1chromosomeCM016619.1:142724285..142724349 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold445.1supercontigscaffold445.1:710489..710552 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A06chromosomeA06:2539967..2540030 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A06chromosomeGhir_A06:2917138..2917201 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A06chromosomeA06:2756130..2756193 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:2832600..2832663 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:2792376..2792439 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A06chromosomeGbar_A06:2725809..2725872 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:2790269..2790332 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:2755064..2755127 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017641.1chromosomeCM017641.1:2959700..2959763 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:2866159..2866222 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A06chromosomeA06:2899154..2899217 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:2853364..2853427 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:2836003..2836066 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:2848522..2848585 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_06chromosomeB_06:94663920..94663983 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:1813844..1813908 -Gossypium gossypioides (D6) genome ISU_v1n/a
E06chromosomeE06:115007596..115007659 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:2198564..2198627 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0146 ID=USDA_SNP0146; Name=USDA_SNP0146; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTCAACTTGAAAACATTTCAATGCCT[C/G]GTTAGAAGGAACTAA
GCCTTTTTTTATTTGAA