USDA_SNP0145, USDA_SNP0145 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0145
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018213.1chromosomeCM018213.1:80313030..80313092 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:21098652..21098714 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:113514906..113514968 +Gossypium australe (G2) genome CRI_v1.1n/a
A12chromosomeA12:69657328..69657390 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:87973007..87973069 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:88829349..88829411 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:86070052..86070114 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:83217628..83217690 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:82670473..82670535 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:82211718..82211780 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:83727120..83727182 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:86928900..86928962 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:82707071..82707133 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:89439903..89439965 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:89500919..89500981 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:96815218..96815280 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_12chromosomeB_12:69887973..69888035 +Gossypium anomalum (B1) genome NSF_v1n/a
F12chromosomeF12:74206475..74206537 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0145 ID=USDA_SNP0145; Name=USDA_SNP0145; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTCAACAAACTAAATCCAAACATAAAATACATTTAAAGAAGTAATA
AT[A/C]AATGTTTTCC