USDA_SNP0141, USDA_SNP0141 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0141
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:21456365..21456427 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:23609683..23609745 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:20128976..20129037 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_05chromosomeKI_05:17962324..17962386 +Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:24321151..24321213 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:40307994..40308055 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:87831910..87831972 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold191715supercontigscaffold191715:130..192 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D05chromosomeD05:21682910..21682972 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:21590662..21590724 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:21946996..21947058 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:24183430..24183492 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:21420877..21420939 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:23468890..23468952 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:21786049..21786111 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:24239914..24239976 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:21667841..21667903 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:24385144..24385206 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:21739052..21739114 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:23324451..23324513 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:21698900..21698962 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:23999716..23999778 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:21613145..21613207 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:23842127..23842189 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:22000188..22000250 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:24186273..24186335 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:21664510..21664572 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:23535171..23535233 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:22277354..22277416 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:24616779..24616841 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:25872766..25872828 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:24243150..24243212 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:20218978..20219040 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:62276832..62276894 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:20690908..20690970 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:18523823..18523885 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:17133484..17133546 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:21361265..21361327 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:17437528..17437590 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:15300196..15300258 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:17805844..17805906 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:26294383..26294445 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:20742388..20742450 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:105223720..105223782 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr05chromosomeChr05:105134759..105134820 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0141 ID=USDA_SNP0141; Name=USDA_SNP0141; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTATGTTCCTAGTGGTCATGTTTATGTGTTGGGAGAC[A/T]ACCG
TAATAACAGCTACGACT