USDA_SNP0140, USDA_SNP0140 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0140
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:111480788..111480850 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:4354159..4354221 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016624.1chromosomeCM016624.1:140003847..140003909 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:27345674..27345736 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:89784339..89784401 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:119710988..119711050 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:118016606..118016668 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:115908106..115908168 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:112578442..112578504 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:109805920..109805982 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:112981548..112981610 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:116885653..116885715 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:122958645..122958707 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:111636628..111636690 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:120627912..120627974 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:128217709..128217771 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:126954877..126954939 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:98240332..98240394 -Gossypium anomalum (B1) genome NSF_v1n/a
F11chromosomeF11:96354522..96354584 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:1060295..1060357 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0140 ID=USDA_SNP0140; Name=USDA_SNP0140; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTAGTAGAACCAATGCTT[C/G]GGGCTGATGTCCTCTTCACAAAT
GTCGTTGTATATCCGAT