USDA_SNP0139, USDA_SNP0139 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0139
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:58145576..58145638 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:111569348..111569410 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:56379848..56379910 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:52935823..52935885 -Gossypioides kirkii genome ISU_v3n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:125128869..125128931 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:4789131..4789193 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:7943126..7943188 -Gossypium australe (G2) genome CRI_v1.1n/a
CM016619.1chromosomeCM016619.1:7918603..7918665 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:1073489..1073551 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:59278806..59278868 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:98665461..98665523 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:61851108..61851170 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:119015080..119015142 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:60760945..60761007 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:121715465..121715527 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:61120830..61120892 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:121026206..121026268 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:58313456..58313518 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:116889210..116889272 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:58267736..58267798 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:110588387..110588449 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:58274649..58274711 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:113635887..113635949 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:58787560..58787622 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:116580822..116580884 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:61740788..61740850 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:122060369..122060431 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:58846939..58847001 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:114837919..114837981 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:61860127..61860189 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:123201934..123201996 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:123144264..123144326 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:124569360..124569422 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:56013330..56013392 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:5463085..5463147 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:58248261..58248323 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:59952421..59952483 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:38042976..38043038 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:39286886..39286948 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:7134849..7134911 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr06chromosomeChr06:7303754..7303816 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0139 ID=USDA_SNP0139; Name=USDA_SNP0139; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTAGCCATTAAGTAAAGCACTGCAAGTCAAG[A/G]CATCAGGTTT
CACATTGCATTCACTCA