USDA_SNP0138, USDA_SNP0138 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0138
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018211.1chromosomeCM018211.1:2707118..2707180 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:126639463..126639525 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold26.1supercontigscaffold26.1:560078..560140 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:2653562..2653624 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:2484539..2484601 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:2713913..2713975 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:2079535..2079597 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:2896387..2896449 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A10chromosomeGbar_A10:2849246..2849308 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:2785547..2785609 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:2917329..2917391 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:2996738..2996800 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:2966578..2966640 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:2837670..2837732 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:2895724..2895786 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:2697937..2697999 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:2697875..2697937 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:98054837..98054899 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:2650355..2650417 +Gossypium lobatum (D7) genome ISU_v1n/a
F10chromosomeF10:2615783..2615845 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0138 ID=USDA_SNP0138; Name=USDA_SNP0138; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTAGAATCATT[G/T]TCCTTAAGTTCATTCTTGAAAGCTTTAGAG
AAAATTAGGGAAGCAGG