USDA_SNP0137, USDA_SNP0137 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0137
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:2723476..2723538 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:3186934..3186996 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:2431746..2431808 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:9617196..9617258 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016618.1chromosomeCM016618.1:93543755..93543817 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:54228475..54228537 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr7chromosomeDt_chr7:37031744..37031806 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:2785713..2785775 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:3294540..3294602 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:2737360..2737422 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:3178890..3178952 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:2611176..2611238 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:3284792..3284854 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:2745531..2745593 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:3075351..3075413 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:2768899..2768961 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:3159290..3159352 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:2522433..2522495 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:3234787..3234849 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:2537969..2538031 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:3153985..3154047 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:2603580..2603642 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:3338187..3338249 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:2818460..2818522 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:3293680..3293742 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:2624937..2624999 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:2971396..2971458 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:2847481..2847543 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:3435141..3435203 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:3278803..3278865 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:9795065..9795127 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:2440208..2440270 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:91859495..91859557 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:2558459..2558521 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:2553525..2553587 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:2791227..2791289 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:2770118..2770180 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:1947433..1947495 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:2745180..2745241 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:3803981..3804043 -Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:2801483..2801545 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0137 ID=USDA_SNP0137; Name=USDA_SNP0137; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTAATTACAAGAGAAAACCCTCGGTGTTGACAAA[C/G]TGTTGGT
CCCCATAGTCTCACCAG