USDA_SNP0135, USDA_SNP0135 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0135
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:19198929..19198991 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:19418961..19419023 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:42538896..42538958 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:27663043..27663105 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:19536451..19536513 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:20119208..20119270 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:19597117..19597179 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:20068862..20068924 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:19626878..19626940 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:19374364..19374426 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:19118745..19118807 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:19930426..19930488 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:19523588..19523650 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:19399986..19400048 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:20348555..20348617 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:19205019..19205081 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr10chromosomechr10:16608592..16608654 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:15270253..15270315 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:11859463..11859525 -Gossypium gossypioides (D6) genome ISU_v1n/a
F06chromosomeF06:28580395..28580457 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0135 ID=USDA_SNP0135; Name=USDA_SNP0135; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGTAACCTAATTCTAAACTGTTAGTTTTGTTTTCTTTTATTTTATAG
GCTGTTGT[G/T]AAAA