USDA_SNP0133, USDA_SNP0133 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0133
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:62191879..62191941 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:58305876..58305938 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_08chromosomeD10_08:3047382..3047444 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:4583186..4583248 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:11585748..11585810 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:62774598..62774660 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:65149403..65149465 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:65505726..65505788 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:65004656..65004718 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:62295833..62295895 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:62306879..62306941 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:64113357..64113419 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:63918545..63918607 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:66045048..66045110 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:62579876..62579938 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:65790922..65790984 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:59225346..59225408 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:100608601..100608663 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:60719005..60719067 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:45841043..45841105 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr04chromosomeChr04:63053718..63053780 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
F08chromosomeF08:101237855..101237917 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:5156809..5156871 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0133 ID=USDA_SNP0133; Name=USDA_SNP0133; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGTTTTGTACCATATT[A/G]AGAACTTTTTGTTTGGTCTGCATTG
GCGCTGGTGGTATTCGA