USDA_SNP0132, USDA_SNP0132 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0132
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:22756946..22757008 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:36873118..36873179 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:40812053..40812114 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:38964214..38964276 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:91192849..91192910 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr10chromosomeAt_chr10:83798617..83798678 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:23134645..23134707 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:35475216..35475277 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:23725589..23725651 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:38806892..38806953 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:23124458..23124520 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:37841126..37841187 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:23668588..23668650 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:38115698..38115759 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:23230284..23230346 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:37962327..37962388 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:22941670..22941732 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:36688375..36688436 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:22640408..22640470 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:36892386..36892447 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:23480460..23480522 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:38035160..38035221 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:23114933..23114995 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:39130714..39130775 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:22957598..22957660 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:37481121..37481182 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:23979033..23979095 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:38999494..38999555 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:40432162..40432223 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:41786264..41786325 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr10chromosomechr10:19648346..19648407 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:17865395..17865457 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:16273094..16273156 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:16969923..16969985 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:78114565..78114626 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr06chromosomeChr06:124670200..124670261 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0132 ID=USDA_SNP0132; Name=USDA_SNP0132; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGTTTGCTTTAGTTTAGGGCTTCCAAAATTAAGGAGATTTTTT[A/
T]AAAAAAATTATAAAC