USDA_SNP0130, USDA_SNP0130 (genetic_marker) Gossypium hirsutum

Marker Overview
NameUSDA_SNP0130
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i00027Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactStelly, David M.
Gore, Michael A.
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr05chromosomeChr05:40805539..40805539 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018204.1chromosomeCM018204.1:65793018..65793080 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:23418358..23418420 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:94901835..94901897 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:23344581..23344643 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr12chromosomeAt_chr12:97895616..97895678 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:60487615..60487677 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:70494732..70494794 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:70041211..70041273 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:67637484..67637546 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:63919644..63919706 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:65612890..65612952 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:67082797..67082859 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:66988109..66988171 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:70903040..70903102 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:66630494..66630556 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:70851169..70851231 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:40843625..40843687 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:39740510..39740572 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:40377192..40377254 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:33453039..33453101 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:42584205..42584267 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:31288571..31288633 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:27561250..27561312 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:44019990..44020052 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:28277615..28277677 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:23591676..23591738 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:29527922..29527984 -Gossypium lobatum (D7) genome ISU_v1n/a
F03chromosomeF03:76366765..76366827 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0130 ID=USDA_SNP0130; Name=USDA_SNP0130; organism=Gossypium hirsutum; type=genetic_marker; length=68bp
TGCAGGTTGTATCCACTCATGCAGAAACTGGTTTCGGCCGCCAACGAGTA
TTGTATTCATAAC[A/G]