USDA_SNP0129, USDA_SNP0129 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0129
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:20093962..20094024 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:20304055..20304117 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:35385857..35385919 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:41747677..41747739 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:100473693..100473754 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:28594609..28594671 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:20492644..20492706 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:21032231..21032293 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:20496828..20496890 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:20982298..20982360 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:20540405..20540467 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:20269080..20269142 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:20000820..20000882 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:20845686..20845748 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:20430893..20430955 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:34436767..34436829 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:20263235..20263297 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:21262406..21262468 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:34963227..34963289 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:36297685..36297747 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:20097759..20097821 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:20539156..20539218 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:17262029..17262091 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:15812619..15812681 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:21466756..21466818 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:14339006..14339068 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:14968250..14968312 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:83349338..83349400 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:27213162..27213223 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0129 ID=USDA_SNP0129; Name=USDA_SNP0129; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGTTCTTGCTCACTACGTTTTTCACTTAGGGGCGAT[G/T]GAAAG
CACCTTGTTTCTACAGA