USDA_SNP0128, USDA_SNP0128 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0128
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:49497352..49497414 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:42676139..42676200 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_09chromosomeKI_09:37789262..37789326 -Gossypioides kirkii genome ISU_v3n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:83726539..83726600 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:1208317..1208378 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:1519013..1519075 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold104.1supercontigscaffold104.1:1832316..1832378 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:49900504..49900566 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:51695119..51695181 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:80766432..80766492 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:50938139..50938201 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:51462928..51462990 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:49544786..49544848 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:50350169..50350231 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:76616972..76617032 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:52713746..52713808 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:50468241..50468303 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:51973670..51973731 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:51161350..51161412 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:53352188..53352250 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:83123478..83123539 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:85861601..85861662 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:48913071..48913132 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:69399028..69399090 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:49765815..49765876 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:41563663..41563724 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:35006004..35006065 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:50850921..50850982 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:38797847..38797908 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:29446798..29446859 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:36130075..36130135 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:1429339..1429399 +Gossypium stocksii (E1) genome NSF_v1n/a
F09chromosomeF09:69557135..69557196 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr09chromosomeChr09:131324376..131324437 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0128 ID=USDA_SNP0128; Name=USDA_SNP0128; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGTTATCACTGAATGATTAGAAAAAAATCC[C/T]AGAATACTAAT
AAAACAGAAAATCATTG