USDA_SNP0127, USDA_SNP0127 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0127
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018203.1chromosomeCM018203.1:44661561..44661623 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:32270277..32270339 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:26422712..26422774 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:30969564..30969626 -Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:81585282..81585344 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:30843692..30843754 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:71579954..71580015 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr3chromosomeDt_chr3:40086190..40086252 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr3chromosomeAt_chr3:91970618..91970680 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:43563310..43563372 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:25728798..25728860 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:47502492..47502554 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:31688011..31688073 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:45727461..45727523 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:33360560..33360622 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:46079452..46079514 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:32620283..32620345 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:45530677..45530739 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:32037838..32037900 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A02chromosomeGbar_A02:45160301..45160363 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:30683039..30683101 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:45619150..45619212 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:33328777..33328839 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:44943056..44943118 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:31671922..31671984 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:48140939..48141001 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:35722457..35722519 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:45434019..45434081 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:33127385..33127447 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:46995983..46996045 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:33689264..33689326 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:30408753..30408815 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:87488682..87488744 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:28504847..28504909 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:26214134..26214196 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:30088937..30088999 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:15832227..15832289 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:12864004..12864066 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:31839685..31839747 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:13211595..13211657 +Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:14003434..14003496 +Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:56178825..56178887 -Gossypium stocksii (E1) genome NSF_v1n/a
F02chromosomeF02:50507063..50507125 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0127 ID=USDA_SNP0127; Name=USDA_SNP0127; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGTTAACCAAGAACATTATTACCACTTAGTAATTGTAGCATAAACA
ATAATTACTT[C/G]TT