USDA_SNP0124, USDA_SNP0124 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0124
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:22704340..22704402 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:21320266..21320328 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_08chromosomeD10_08:28500885..28500947 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016621.1chromosomeCM016621.1:96896356..96896418 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr4chromosomeDt_chr4:2348001..2348063 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:22521439..22521501 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:22777696..22777758 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:22273500..22273562 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:22003381..22003443 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:22475896..22475958 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:22611214..22611276 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:22857859..22857921 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:22655885..22655947 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:24323187..24323249 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:22805548..22805610 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:22852624..22852686 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:21333133..21333195 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:21883482..21883544 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:17491236..17491298 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:15653458..15653520 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:22991190..22991252 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:15294774..15294836 +Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:15213471..15213533 +Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:44765036..44765098 -Gossypium stocksii (E1) genome NSF_v1n/a
Sequence
>USDA_SNP0124 ID=USDA_SNP0124; Name=USDA_SNP0124; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGTGGTCTGCAACATCCAGACTTTACAATGGAACATAATTAGT[A/
G]TGTAGTACCAAAACA