USDA_SNP0119, USDA_SNP0119 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0119
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018227.1chromosomeCM018227.1:3513797..3513859 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:4094354..4094416 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:3108659..3108721 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:2248875..2248937 -Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:3689675..3689737 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:3198769..3198831 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:92530218..92530280 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr13chromosomeDt_chr13:53756094..53756156 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:90303911..90303973 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:3547728..3547790 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:3895099..3895161 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:3524139..3524201 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:4075475..4075537 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:3389479..3389541 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:4114181..4114243 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:3552437..3552499 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:3995426..3995488 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:3611788..3611850 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:4086596..4086658 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:3262809..3262871 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:4136318..4136380 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:3335177..3335239 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:4032811..4032873 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:3361765..3361827 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:4251507..4251569 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:3577089..3577151 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:4159732..4159794 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:3414131..3414193 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:3913119..3913181 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:3640914..3640976 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:4340708..4340770 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:4201101..4201163 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:8945524..8945586 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:3128931..3128993 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:91076466..91076528 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:3361409..3361471 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:3229468..3229530 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:3567753..3567815 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:3525476..3525538 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:3539282..3539344 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:2492638..2492700 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:3626177..3626239 -Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:4806985..4807047 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr05chromosomeChr05:111076925..111076987 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0119 ID=USDA_SNP0119; Name=USDA_SNP0119; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGTCCCTTCAGCAAT[C/G]GCTCCATCATCCTTATACGAGCTTTG
CTGATCTCTCGCTTAAG