USDA_SNP0116, USDA_SNP0116 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0116
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:8224390..8224452 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:9459655..9459717 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:7844106..7844168 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:9462560..9462622 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:52698508..52698570 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:13514967..13515029 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:59327549..59327611 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:52588466..52588528 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:8243700..8243762 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:8858026..8858088 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:8695421..8695483 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:9545407..9545469 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:8474766..8474828 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:9296854..9296916 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:8627205..8627267 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:9579673..9579735 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:8470866..8470928 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:9961184..9961246 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:8595943..8596005 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D05chromosomeGbar_D05:8561969..8562031 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:8669407..8669469 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:9661279..9661341 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:8558300..8558362 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:9491282..9491344 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:8856076..8856138 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:9633404..9633466 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:8485017..8485079 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:9414678..9414740 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:8736988..8737050 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:9731853..9731915 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:10258720..10258782 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:9341259..9341321 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:7879904..7879966 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:76683522..76683584 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:8127338..8127400 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:7563469..7563531 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr09chromosomechr09:7562608..7562670 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:7499195..7499257 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:8456381..8456443 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:7519310..7519372 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:6227358..6227420 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:7299908..7299970 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:10155565..10155626 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:8242864..8242926 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:188894511..188894573 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr13chromosomeChr13:188891694..188891756 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0116 ID=USDA_SNP0116; Name=USDA_SNP0116; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGTACATGAAATTAATTCCTAGCAAATTAATGCCTCAAATGATCAC
ACAA[A/T]CATCAAAC