USDA_SNP0115, USDA_SNP0115 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0115
dbSNP IDN/A
TypeSNP
SNP AllelesG/A
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:50202151..50202213 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:43289991..43290053 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_09chromosomeD10_09:594461..594523 -Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold568.1supercontigscaffold568.1:438684..438746 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:50562331..50562393 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:52347884..52347946 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:51564027..51564089 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:52116655..52116717 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:50198627..50198689 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:51049249..51049311 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:53348379..53348441 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:51108885..51108947 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:52717111..52717173 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:51686562..51686624 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:54005994..54006056 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:49525856..49525918 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:50411178..50411240 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:42211779..42211841 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:35536097..35536159 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:51488819..51488881 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:39401909..39401971 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:29954515..29954577 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:36786536..36786598 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr09chromosomeChr09:131789963..131790025 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0115 ID=USDA_SNP0115; Name=USDA_SNP0115; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGGTTCCATTGCTCTTCTTTGCGACCGTC[A/G]TTGAAAACTTCA
GCAACATCACCTGATAT