USDA_SNP0113, USDA_SNP0113 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0113
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:59895416..59895478 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:85832732..85832794 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:86102145..86102207 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:55900402..55900464 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:64988381..64988443 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:62645653..62645715 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:63146374..63146436 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:61434789..61434851 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:59675630..59675692 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:60270023..60270085 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:62996915..62996977 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:65851558..65851620 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:60416964..60417026 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:64723363..64723425 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:37559469..37559531 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:37074807..37074869 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:33710530..33710591 +Gossypium anomalum (B1) genome NSF_v1n/a
Sequence
>USDA_SNP0113 ID=USDA_SNP0113; Name=USDA_SNP0113; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGGTC[A/C]AACACTAATCAATAATAGTTCAACATTGCAATTGCT
ATTGTTACTTTACGATT