USDA_SNP0112, USDA_SNP0112 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0112
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:45417840..45417902 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:73194229..73194290 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:40293447..40293509 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:66943610..66943671 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:17097101..17097162 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:100149310..100149371 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2593.1supercontigscaffold2593.1:63614..63675 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:43698883..43698945 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:72701279..72701340 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:45354316..45354378 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:76811943..76812004 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:47276732..47276794 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:77513268..77513329 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:46735754..46735815 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:76315936..76315997 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:44210453..44210515 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:73221753..73221814 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold279supercontigScaffold279:68768..68829 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D01chromosomeGbar_D01:45611644..45611706 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:46341664..46341726 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:75278086..75278147 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:46420946..46421008 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:73624001..73624062 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:47594650..47594712 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:79815727..79815788 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:45831934..45831996 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:71848982..71849043 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:47257977..47258039 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:78466124..78466185 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:91266517..91266578 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:35075257..35075318 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:35813964..35814026 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:71010674..71010735 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:44089070..44089131 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:33625000..33625061 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:30584349..30584410 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:44541913..44541974 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:31915259..31915320 -Gossypium lobatum (D7) genome ISU_v1n/a
F01chromosomeF01:43318765..43318826 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:43031474..43031535 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0112 ID=USDA_SNP0112; Name=USDA_SNP0112; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGGTATGCATAATGAAAGAAGCAGTG[C/T]TCAAAGAAAAAAAAG
ATAAGAGAAAGAAAGAG