USDA_SNP0106, USDA_SNP0106 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0106
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:61827276..61827338 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:115156674..115156736 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:59836730..59836792 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:50822283..50822345 -Gossypioides kirkii genome ISU_v3n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:130295192..130295254 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:1119381..1119443 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:1401434..1401496 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:84603107..84603169 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:63166533..63166595 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold1329_A06supercontigscaffold1329_A06:30018..30080 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:65789516..65789578 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:123048943..123049005 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:64382703..64382765 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:125513456..125513518 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:65184099..65184161 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:125127937..125127999 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:62099590..62099652 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:120921212..120921274 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:62023711..62023773 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:114170118..114170180 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:61845353..61845415 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:117230540..117230602 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:62217054..62217116 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:120599332..120599394 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:65887205..65887267 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:125863125..125863187 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:62360483..62360545 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:118467600..118467662 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:65627845..65627907 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:127207809..127207871 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:127863853..127863915 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:130006675..130006737 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:59436617..59436679 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:3527872..3527933 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:62094996..62095058 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:47967098..47967160 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:42613069..42613131 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:63706838..63706900 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:40827951..40828013 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:34922979..34923041 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:42436774..42436836 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:1257248..1257310 -Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:97115891..97115953 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:986008..986070 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0106 ID=USDA_SNP0106; Name=USDA_SNP0106; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGCTGGGGGAGAATTGACGGATTTT[A/G]TTATAATCTTGAGAAC
GAATGATGCTGTTAAGA