USDA_SNP0103, USDA_SNP0103 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0103
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:11678338..11678400 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:11623481..11623543 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016619.1chromosomeCM016619.1:117775615..117775677 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:19049522..19049584 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:11832622..11832684 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:12380533..12380595 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:12019896..12019958 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:12365385..12365447 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:11876448..11876510 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:11811599..11811661 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:11598422..11598484 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:12278737..12278799 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:11963733..11963795 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:11858246..11858308 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:12537541..12537603 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:11400343..11400405 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:11987166..11987228 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:10296325..10296387 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:9565869..9565931 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:14375139..14375201 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:8404225..8404287 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:7322250..7322312 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:8853338..8853400 +Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>USDA_SNP0103 ID=USDA_SNP0103; Name=USDA_SNP0103; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGATGTTGCTTTATGGATATCACAGAGGATCAAGGTAT[C/G]CTA
TGTGGTTCCAACTTAGG