USDA_SNP0100, USDA_SNP0100 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0100
dbSNP IDN/A
TypeSNP
SNP AllelesA/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018225.1chromosomeCM018225.1:20631274..20631336 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:24800067..24800129 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:45511813..45511874 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:14352289..14352351 +Gossypioides kirkii genome ISU_v3n/a
D10_11chromosomeD10_11:19968452..19968514 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:34588199..34588261 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:22270612..22270674 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:56812375..56812437 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:20708210..20708272 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:25118052..25118114 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:21248525..21248587 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:20675174..20675236 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:24716415..24716477 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:21269976..21270038 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:25403500..25403562 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:21057524..21057586 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:25836818..25836880 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D11chromosomeGbar_D11:20931657..20931719 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:24585479..24585541 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:20798906..20798968 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:24692659..24692721 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:20730113..20730175 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:25313360..25313422 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:21231780..21231842 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:25471926..25471988 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:20809443..20809505 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:25089938..25090000 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:21614465..21614527 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:26058741..26058803 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:43427724..43427785 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:24119374..24119436 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:20843256..20843318 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:17486966..17487028 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:17482498..17482560 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:20802158..20802220 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:15798796..15798858 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:13883152..13883214 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:16662963..16663025 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:27578118..27578180 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:20207532..20207594 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:142939667..142939729 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0100 ID=USDA_SNP0100; Name=USDA_SNP0100; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGAGAAATAATTACGGCTGTTTGTTCTCCTCCCGCAAGGATCATTT
GTTGATGGTCA[A/T]G