USDA_SNP0098, USDA_SNP0098 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0098
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:58064043..58064105 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:97758702..97758764 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:1709480..1709542 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:1544819..1544881 -Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:1797565..1797627 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:52978855..52978917 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:2340372..2340433 -Gossypium australe (G2) genome CRI_v1.1n/a
D12chromosomeD12:57514764..57514826 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:85781654..85781716 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:60835592..60835654 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:105702699..105702761 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:59992315..59992377 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:105761641..105761703 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:60895620..60895682 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:100773860..100773922 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:57295049..57295111 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:100252363..100252425 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:59084187..59084249 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:99802449..99802511 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:58979906..58979968 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:100998857..100998919 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:61992195..61992257 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:104875335..104875397 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:59601668..59601730 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:100133834..100133896 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:61417931..61417993 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:107437772..107437834 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:108436913..108436975 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:115437099..115437161 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:56030267..56030329 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:84808099..84808161 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:56493734..56493796 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:44119683..44119745 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:41735330..41735392 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:58066853..58066915 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:40901950..40902012 +Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:32177960..32178022 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:39411785..39411847 +Gossypium lobatum (D7) genome ISU_v1n/a
F12chromosomeF12:89633670..89633732 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:172290321..172290383 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0098 ID=USDA_SNP0098; Name=USDA_SNP0098; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGAATGTACATGGAGAATGGGGACACAAAGGTGAAATTTATC[C/T
]AAATGCATTTTAGCAA