USDA_SNP0095, USDA_SNP0095 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0095
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018207.1chromosomeCM018207.1:112362332..112362394 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:57283267..57283329 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:52543074..52543136 +Gossypioides kirkii genome ISU_v3n/a
D10_06chromosomeD10_06:3665880..3665942 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:5419953..5420015 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold235.1supercontigscaffold235.1:239281..239343 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:63232886..63232948 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:60169203..60169265 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:99666434..99666496 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:62971955..62972017 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:120055657..120055719 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:61775315..61775377 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:122648276..122648338 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:62225782..62225844 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:122145213..122145275 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:59424276..59424338 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:117886736..117886798 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A06chromosomeGbar_A06:111381293..111381355 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:114385992..114386054 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:117684861..117684923 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:62991173..62991235 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:122950930..122950992 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:115641675..115641737 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:62840133..62840195 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:124199417..124199479 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:124542481..124542543 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:56913346..56913408 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:294034..294096 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:59278786..59278848 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:45514063..45514125 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:40754310..40754372 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:60903229..60903291 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:38634909..38634971 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:33256431..33256493 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:40103854..40103916 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:5733723..5733785 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:94215874..94215936 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:5513745..5513807 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr06chromosomeChr06:5517400..5517461 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0095 ID=USDA_SNP0095; Name=USDA_SNP0095; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGAACACCATTAGGGCATACCATTTTAAAACGTCGTCATATTGC[C
/T]GCTTCTGGTTGGAG