USDA_SNP0094, USDA_SNP0094 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0094
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:1828709..1828770 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018211.1chromosomeCM018211.1:1910976..1911038 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:60707567..60707628 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:127451630..127451692 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:62224582..62224643 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:2454039..2454100 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1957.1supercontigscaffold1957.1:64093..64154 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold26.1supercontigscaffold26.1:1363058..1363120 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:1895259..1895321 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:2199374..2199435 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:1633386..1633448 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:1935018..1935079 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:1940127..1940189 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:2003679..2003740 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:1264245..1264307 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:2052658..2052719 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:2061494..2061556 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:1856728..1856789 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:1989500..1989562 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:1898130..1898191 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:1956030..1956092 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:1881622..1881683 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:2094325..2094387 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:1936878..1936939 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:2117688..2117750 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:1908495..1908556 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:1969336..1969398 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:1995681..1995742 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:2032019..2032081 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:1899946..1900008 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:1885658..1885720 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:1693910..1693971 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:97240757..97240819 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:1679500..1679561 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:1768451..1768512 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:1402547..1402608 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:1898256..1898317 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:1425865..1425926 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:1361144..1361206 +Gossypium gossypioides (D6) genome ISU_v1n/a
E10chromosomeE10:111526066..111526127 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:1887556..1887617 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:167563023..167563085 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0094 ID=USDA_SNP0094; Name=USDA_SNP0094; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGGAAATAAAATAAATAGATATTTTCATAGT[C/T]GTCAGAGTAAA
ATAGATGTTATGTATTC