USDA_SNP0090, USDA_SNP0090 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0090
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:710142..710204 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018213.1chromosomeCM018213.1:581686..581748 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:56719295..56719357 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:37583632..37583694 -Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:102369076..102369138 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:566676..566738 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:125574284..125574346 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:43319162..43319224 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1701.1supercontigscaffold1701.1:74632..74694 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:641480..641542 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:525165..525227 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:683427..683489 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:674844..674906 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:674936..674998 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:687845..687907 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:676519..676581 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:687702..687764 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:664879..664941 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:698110..698172 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:554493..554555 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:671535..671597 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A12chromosomeA12:645418..645480 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:682393..682455 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:578019..578081 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:663088..663150 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:688025..688087 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:686359..686421 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:595864..595926 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:700041..700103 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:683068..683130 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:627813..627875 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:568301..568363 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:703755..703817 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:715395..715457 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:685579..685641 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:647803..647865 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:556241..556303 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:632891..632953 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:539632..539694 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:476593..476655 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:614553..614615 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:705340..705402 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr12chromosomeChr12:619404..619466 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0090 ID=USDA_SNP0090; Name=USDA_SNP0090; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTTTATTTTCCTGCAACCCTCAGTAA[C/T]AACAACGGCCCACA
TTGTGACTACAGTGAAA