USDA_SNP0088, USDA_SNP0088 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0088
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018226.1chromosomeCM018226.1:49233615..49233677 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:10431888..10431950 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:7855770..7855832 +Gossypioides kirkii genome ISU_v3n/a
D10_12chromosomeD10_12:44189536..44189598 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:17205470..17205532 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold1127.1supercontigscaffold1127.1:192245..192307 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr8chromosomeDt_chr8:45608167..45608229 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:48782623..48782685 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:51625864..51625926 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:50589439..50589501 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:51752886..51752948 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:49533881..49533943 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D12chromosomeGbar_D12:48501953..48502015 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:49715933..49715995 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:49598602..49598664 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:52394145..52394207 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:50194427..50194489 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:51703100..51703162 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:47345911..47345973 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:75880861..75880923 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:47561064..47561126 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr08chromosomechr08:36919503..36919565 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_08chromosomeChr_08:34435995..34436057 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:48870090..48870152 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:26452052..26452114 -Gossypium gossypioides (D6) genome ISU_v1n/a
E12chromosomeE12:100446619..100446681 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:79854098..79854160 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0088 ID=USDA_SNP0088; Name=USDA_SNP0088; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTTCTAACTTGCTGACACAGGGGTTCAAACCATC[A/G]TCATGG
TCACAAGATGCTGTGAA