USDA_SNP0087, USDA_SNP0087 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0087
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:49493773..49493835 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:75789964..75790028 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:42672599..42672661 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:83722940..83723004 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:1211895..1211957 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:1522568..1522630 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4646.1supercontigscaffold4646.1:5799..5861 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold104.1supercontigscaffold104.1:1835881..1835943 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:49896935..49896997 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:73674566..73674630 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:51691555..51691617 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:80762834..80762898 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:50934570..50934632 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:81941542..81941606 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:51459359..51459421 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:82213022..82213086 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:49541217..49541279 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:78577474..78577538 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:50346590..50346652 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:76613374..76613438 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:52710177..52710239 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A09chromosomeA09:77962519..77962583 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:50464661..50464723 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:77946731..77946795 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:51970090..51970152 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:81351634..81351698 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:51157769..51157831 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:78062355..78062419 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:53348619..53348681 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:84032205..84032269 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:83119883..83119945 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:85858002..85858066 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:48909525..48909587 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:69395424..69395486 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:49762236..49762298 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:41560381..41560443 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:35002466..35002528 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:50847359..50847421 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:38794133..38794195 +Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:29443158..29443220 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:36125128..36125190 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr09chromosomeChr09:131327988..131328050 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0087 ID=USDA_SNP0087; Name=USDA_SNP0087; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTTATGTGGTTGTTAGCTAACAACATTTCATACGGACTTTTGCT[
C/T]AGGATTCATCCCC