USDA_SNP0086, USDA_SNP0086 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0086
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:10262076..10262138 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:14153235..14153297 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_06chromosomeKI_06:6365365..6365426 -Gossypioides kirkii genome ISU_v3n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:23735889..23735951 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:49871753..49871815 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:127352554..127352616 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:21685257..21685319 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:10388538..10388600 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:13741705..13741767 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:10983521..10983583 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:15241472..15241534 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:10654243..10654305 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:14589990..14590052 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:10968419..10968481 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:15122506..15122568 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:10474404..10474466 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:14540296..14540358 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:10413644..10413706 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:14083932..14083994 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:10233843..10233905 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:14172058..14172120 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:10957493..10957555 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:15091540..15091602 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:10596972..10597034 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:14413279..14413341 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:10460941..10461003 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:14473866..14473928 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:11108151..11108213 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:15263432..15263494 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:14769531..14769593 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:15689486..15689548 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:10132497..10132559 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:83077512..83077574 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:10629032..10629094 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:8977682..8977744 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:8408824..8408886 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:10904245..10904307 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:7531500..7531562 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:6499076..6499137 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10_6337510chromosomeChr10_6337510:2760..2822 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:100396327..100396389 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:13356812..13356874 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>USDA_SNP0086 ID=USDA_SNP0086; Name=USDA_SNP0086; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTGTTTTTGTTGCTGATGGAAA[A/C]GTTGTAATGCATTCTGTA
AATTAATACTTATATTA