USDA_SNP0083, USDA_SNP0083 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0083
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:15861883..15861945 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:23744939..23745001 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:15939667..15939729 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:28509665..28509727 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:45740718..45740780 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:113318682..113318744 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:14185908..14185970 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:2945214..2945276 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:16202719..16202781 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:25913486..25913548 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:16723815..16723877 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:27919346..27919408 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:16264107..16264169 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:27054409..27054471 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:16705259..16705321 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:27568355..27568417 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:16227624..16227686 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:27104511..27104573 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:16022471..16022533 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold953supercontigScaffold953:21793..21855 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:15755039..15755101 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:26281203..26281265 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:16536005..16536067 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:24712207..24712269 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:16247165..16247227 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:25237358..25237420 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:16061918..16061980 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:24114372..24114434 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:16886513..16886575 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:27972047..27972109 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:25315099..25315161 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:27101516..27101578 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:15733390..15733452 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:16609003..16609065 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:13790726..13790788 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:13040186..13040248 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:17114056..17114118 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:11520449..11520511 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:9925449..9925511 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:12102613..12102675 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:89910700..89910762 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:34173448..34173510 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:153956127..153956189 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0083 ID=USDA_SNP0083; Name=USDA_SNP0083; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTGGCACATCTGTAATGA[C/T]TGAATCAGGAACAGAGTAACCA
TTCTCCTTAGGAACAAC