USDA_SNP0081, USDA_SNP0081 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0081
dbSNP IDN/A
TypeSNP
SNP AllelesG/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018215.1chromosomeCM018215.1:10292881..10292943 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:12005349..12005411 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:9896187..9896249 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:13501208..13501270 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:50646461..50646523 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:16824778..16824840 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:45404428..45404490 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr2chromosomeAt_chr2:12431538..12431600 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:9440478..9440540 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:11786935..11786997 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:10754092..10754154 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:12535852..12535914 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:10554771..10554833 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:12113731..12113793 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:10283401..10283463 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:12432818..12432880 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:10643019..10643081 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:12290659..12290721 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:10900556..10900618 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:12150991..12151053 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:10747670..10747732 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:12168405..12168467 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:10493835..10493897 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:13144969..13145031 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:11390816..11390878 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:10690132..10690194 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:12267720..12267782 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:10954268..10954330 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:12441670..12441732 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:12073986..12074048 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:13391257..13391319 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:9755917..9755979 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:13531738..13531800 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:10374637..10374699 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:9471744..9471806 -Gossypium armourianum (D2-1) genome ISU_v1n/a
chr02chromosomechr02:9471304..9471366 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:8542577..8542639 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:10591694..10591756 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:7389730..7389792 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:9689920..9689982 -Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:14993772..14993834 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:10758670..10758732 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:177774539..177774601 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0081 ID=USDA_SNP0081; Name=USDA_SNP0081; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTCCTCCGCCTCAGCGTTGGGGCTCGCCATGCACCA[G/T]GTCT
GCCCTGACGTCGCCTTT