USDA_SNP0079, USDA_SNP0079 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0079
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018213.1chromosomeCM018213.1:7820387..7820449 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:98820396..98820458 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:98523623..98523685 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:98534530..98534592 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016625.1chromosomeCM016625.1:23615307..23615369 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:39756510..39756572 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A12chromosomeA12:8074425..8074487 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:8063554..8063616 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A12chromosomeGhir_A12:8157339..8157401 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:8146483..8146545 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:8135606..8135668 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A12chromosomeA12:7811038..7811100 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:8155537..8155599 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:8144672..8144734 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:8133548..8133610 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:8122677..8122739 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A12chromosomeGbar_A12:8212926..8212988 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A12chromosomeGbar_A12:7963659..7963721 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A12chromosomeA12:7748030..7748092 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017621.1chromosomeCM017621.1:8035350..8035412 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:8024534..8024596 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:7838777..7838839 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017647.1chromosomeCM017647.1:8437157..8437220 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:8245967..8246029 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017699.1chromosomeCM017699.1:7949965..7950027 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017699.1chromosomeCM017699.1:7700140..7700202 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A12chromosomeA12:8183681..8183743 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:8172815..8172877 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:8600467..8600529 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:8499946..8500009 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:8279376..8279438 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:8222201..8222263 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:8353030..8353093 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:8123517..8123579 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:8134422..8134484 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F12chromosomeF12:7228849..7228911 +Gossypium longicalyx (F1) genome NSF_v1n/a
F12chromosomeF12:7218008..7218070 +Gossypium longicalyx (F1) genome NSF_v1n/a
F12chromosomeF12:6986710..6986772 -Gossypium longicalyx (F1) genome NSF_v1n/a
F12chromosomeF12:6965400..6965462 -Gossypium longicalyx (F1) genome NSF_v1n/a
F12chromosomeF12:6908009..6908071 -Gossypium longicalyx (F1) genome NSF_v1n/a
F12chromosomeF12:7012136..7012197 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr12chromosomeChr12:145980250..145980312 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0079 ID=USDA_SNP0079; Name=USDA_SNP0079; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTATCAATAGATAACTAATAATATTTTTAACTTTCATGAAATT[A
/G]AGGAACAGGAACTC