USDA_SNP0078, USDA_SNP0078 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0078
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:50071658..50071720 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:43167324..43167386 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016622.1chromosomeCM016622.1:743612..743674 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold568.1supercontigscaffold568.1:557666..557728 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:50443885..50443947 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:52228874..52228936 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:51448741..51448803 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:51997485..51997547 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:50079457..50079519 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:50918768..50918830 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:53229381..53229443 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:50985049..50985111 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:52597416..52597478 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:51563157..51563219 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:53886812..53886874 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:49403369..49403431 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:50289036..50289098 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr06chromosomechr06:42059776..42059838 -Gossypium armourianum (D2-1) genome ISU_v1n/a
chr06chromosomechr06:42059537..42059599 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_06chromosomeChr_06:35411086..35411148 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:51353518..51353580 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:39274044..39274106 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06_3424162chromosomeChr06_3424162:931..993 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr06chromosomeChr06:36644464..36644526 -Gossypium lobatum (D7) genome ISU_v1n/a
E09chromosomeE09:847125..847187 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr09chromosomeChr09:130651718..130651779 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0078 ID=USDA_SNP0078; Name=USDA_SNP0078; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCTATAGCCATAAATTTGGCCTTACTCGTAT[A/C]CTCTACGTAC
CCGAACTTTGTTGTTAG