USDA_SNP0071, USDA_SNP0071 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0071
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:57574715..57574777 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:110941946..110942008 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:55832846..55832908 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_06chromosomeD5_06:55804653..55804715 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:124618481..124618543 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016619.1chromosomeCM016619.1:8886402..8886464 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold2542.1supercontigscaffold2542.1:5262..5324 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4036.1supercontigscaffold4036.1:2308..2370 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold5492supercontigscaffold5492:8716..8778 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D06chromosomeD06:58749316..58749378 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D06chromosomeD06:58733038..58733100 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:61280769..61280831 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D06chromosomeGhir_D06:61257008..61257070 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:118393114..118393176 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:60228141..60228203 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:60207528..60207590 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:121112316..121112378 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:60550321..60550383 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:60526551..60526613 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:120403852..120403914 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:57753378..57753440 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D06chromosomeD06:57729593..57729655 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:116266706..116266768 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:57740776..57740838 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:109961068..109961130 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:57776395..57776457 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:113032391..113032453 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:58177251..58177313 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017628.1chromosomeCM017628.1:58153460..58153522 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:115966750..115966812 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:61168822..61168884 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017654.1chromosomeCM017654.1:61127999..61128061 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:121473198..121473260 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:58246297..58246359 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:61289215..61289277 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D06chromosomeD06:61265427..61265489 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:122579365..122579427 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:122294403..122294465 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:123889266..123889328 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:55466902..55466964 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:55438786..55438848 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:6170113..6170175 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:57687903..57687965 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:57645329..57645391 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:44749966..44750028 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:40004094..40004156 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr_10chromosomeChr_10:40004352..40004413 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:59465693..59465755 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:37866375..37866437 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:38865233..38865295 +Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:7812805..7812867 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr06chromosomeChr06:8384857..8384919 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0071 ID=USDA_SNP0071; Name=USDA_SNP0071; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCCCCAACTTGACTTCAGAATCACTT[C/T]TCCGTAACATTATCA
ACAAAGCTTGTGATCAC