USDA_SNP0068, USDA_SNP0068 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0068
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018204.1chromosomeCM018204.1:95803043..95803105 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:124795322..124795383 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:12785347..12785409 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr5chromosomeAt_chr5:44938885..44938947 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold28155supercontigscaffold28155:141..203 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:90459092..90459154 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:102366098..102366160 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:101408354..101408416 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:99444013..99444075 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:94688399..94688461 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A03chromosomeGbar_A03:94979961..94980023 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:97268611..97268673 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:96569550..96569612 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:103552032..103552094 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:97587257..97587319 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:102990679..102990741 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:10847407..10847469 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:10868621..10868682 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:10470941..10471003 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:57559869..57559930 -Gossypium thurberi (D1-5) genome CRI_v1n/a
F03chromosomeF03:100834323..100834385 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:17087514..17087576 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0068 ID=USDA_SNP0068; Name=USDA_SNP0068; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCATTCTTCCTTTCTAAGAAAAATTAGCATTCCAAAA[A/G]TACT
ATAGTGATTAAATTGTT