USDA_SNP0066, USDA_SNP0066 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0066
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018219.1chromosomeCM018219.1:29145816..29145878 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:34846818..34846880 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:27783046..27783108 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:35853634..35853696 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:32681539..32681601 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016618.1chromosomeCM016618.1:69779512..69779574 +Gossypium australe (G2) genome CRI_v1.1n/a
CM016618.1chromosomeCM016618.1:69786156..69786218 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:38036095..38036157 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:35559176..35559238 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:29892858..29892920 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:32636203..32636265 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:34757711..34757773 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:29278407..29278469 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:34496612..34496674 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:35708090..35708152 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:34771022..34771084 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:29715449..29715511 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:33693273..33693335 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:29448101..29448163 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:35237796..35237858 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:29421924..29421986 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:34797576..34797638 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:29852201..29852263 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:36003457..36003519 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:29509734..29509796 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:35078075..35078137 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:30539056..30539118 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:36134410..36134472 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:37194333..37194395 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:36898994..36899056 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:27930085..27930147 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:50607118..50607180 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:28388885..28388947 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:24980933..24980995 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:24018487..24018549 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:20316952..20317014 -Gossypium gossypioides (D6) genome ISU_v1n/a
E05chromosomeE05:40570315..40570377 -Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:31650159..31650220 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr05chromosomeChr05:90650943..90651004 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0066 ID=USDA_SNP0066; Name=USDA_SNP0066; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCAGTTGGTCTTTCTCCGCCCCCAACATATCCAAA[C/T]GGTTGC
CAGCCGACGAGGTGCAA