USDA_SNP0060, USDA_SNP0060 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0060
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018223.1chromosomeCM018223.1:48528518..48528580 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:41789640..41789702 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
CM016622.1chromosomeCM016622.1:2987284..2987346 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold288.1supercontigscaffold288.1:525102..525164 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:48749548..48749610 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:50744357..50744420 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:50020985..50021047 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:50492925..50492987 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:48578865..48578927 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:49381395..49381457 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:51756685..51756747 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:49472499..49472561 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:51031587..51031649 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:50202653..50202715 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:52364106..52364168 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:48013506..48013568 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr06chromosomeChr06:48842936..48842998 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_06chromosomeChr_06:34253503..34253565 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr06chromosomeChr06:49934657..49934719 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E09chromosomeE09:2701271..2701333 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr09chromosomeChr09:130059348..130059410 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0060 ID=USDA_SNP0060; Name=USDA_SNP0060; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCAATCGCCGCCG[C/T]AAGTGACTTCCGACCGAAGAGAAATCCC
GTTAAAGATCGTCATCG