USDA_SNP0059, USDA_SNP0059 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0059
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018202.1chromosomeCM018202.1:82890982..82891044 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018215.1chromosomeCM018215.1:42366352..42366414 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:35598975..35599037 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:76028806..76028868 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:20132075..20132137 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:81347514..81347576 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr2chromosomeDt_chr2:21135721..21135783 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr13chromosomeDt_chr13:25919916..25919978 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:40394857..40394919 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:63624698..63624760 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:86693463..86693525 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D01chromosomeGhir_D01:42172517..42172579 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:87548493..87548555 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:44127907..44127969 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:85165131..85165193 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:43557322..43557384 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:82953997..82954059 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D01chromosomeD01:41070195..41070257 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A01chromosomeGbar_A01:85200481..85200543 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D01chromosomeGbar_D01:42568013..42568075 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:85254153..85254215 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D01chromosomeD01:43363958..43364020 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:83039118..83039180 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017623.1chromosomeCM017623.1:43315693..43315755 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:89775350..89775412 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:89723999..89724061 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017649.1chromosomeCM017649.1:44368432..44368494 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:81496813..81496875 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017701.1chromosomeCM017701.1:42776525..42776587 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:88438318..88438380 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D01chromosomeD01:43999488..43999550 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:81322866..81322928 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:31166810..31166872 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:41275086..41275148 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:30356275..30356337 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:27473390..27473452 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:41620662..41620724 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:30198351..30198413 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:23195066..23195128 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:28852397..28852459 +Gossypium lobatum (D7) genome ISU_v1n/a
F01chromosomeF01:50322154..50322216 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:75948828..75948890 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0059 ID=USDA_SNP0059; Name=USDA_SNP0059; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCAAGCACC[A/C]TTAAAAGAAAATGCATTCAATAGGTTTACAGC
TAGAAAATTAGCTAAAT