USDA_SNP0058, USDA_SNP0058 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0058
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:110881999..110882061 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_11chromosomeKI_11:51908273..51908335 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:5892244..5892306 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:63762607..63762669 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:138035740..138035802 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr1chromosomeAt_chr1:2640711..2640773 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4490_D11supercontigscaffold4490_D11:150038..150100 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:88122801..88122863 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:67551982..67552044 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:118131702..118131764 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:116510633..116510695 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:114346795..114346857 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:63683258..63683320 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:111078548..111078610 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:108101082..108101144 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:111377764..111377826 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017646.1chromosomeCM017646.1:122553500..122553562 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:111176238..111176300 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:120144710..120144772 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D11chromosomeD11:67444871..67444933 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:126220683..126220745 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:125433546..125433608 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:96512435..96512497 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:65115550..65115612 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:46625280..46625342 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:45276702..45276764 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:66473081..66473143 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E11chromosomeE11:109390373..109390435 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:94750197..94750259 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:8437921..8437983 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0058 ID=USDA_SNP0058; Name=USDA_SNP0058; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGCAACTGGAACAATGGGACCGATCATAGGGTTAGTGGACAT[C/T]
GGTGTATTAGAGGATTC