USDA_SNP0054, USDA_SNP0054 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0054
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:33990994..33991056 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:58572495..58572556 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:28680402..28680463 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:68099700..68099761 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:36865593..36865655 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr4chromosomeDt_chr4:34303005..34303067 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:24978658..24978719 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:30839754..30839816 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:51866909..51866970 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:34964263..34964325 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:71194340..71194401 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:74382302..74382363 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:34763916..34763978 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:73832441..73832502 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:33797244..33797306 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:31520647..31520709 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:60967792..60967853 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:32097410..32097472 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:59630082..59630143 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:70712019..70712080 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D08chromosomeD08:33635983..33636045 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:32248816..32248878 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:60517521..60517582 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:36048828..36048890 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:66632845..66632906 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:34086209..34086271 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:59950676..59950737 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:36054272..36054334 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:64405299..64405360 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:80185520..80185581 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:66207625..66207686 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:29291641..29291703 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:51095818..51095880 -Gossypium anomalum (B1) genome NSF_v1n/a
chr04chromosomechr04:22577263..22577325 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:20328839..20328901 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:32469559..32469621 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:19899578..19899640 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:16331045..16331107 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:19804141..19804203 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:60222312..60222374 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:52418766..52418827 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:78809202..78809264 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0054 ID=USDA_SNP0054; Name=USDA_SNP0054; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGATTTAGTTAACATGAAAGTGTAATGGGG[C/G]GTATCAGTGTAA
TAATCTAAAAGAAAAAG