USDA_SNP0050, USDA_SNP0050 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0050
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018224.1chromosomeCM018224.1:908577..908636 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_10chromosomeD10_10:63034016..63034075 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold1231.1supercontigscaffold1231.1:419207..419266 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:915051..915110 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:1199446..1199505 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:956629..956688 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:987194..987253 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:987578..987637 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D10chromosomeGbar_D10:895734..895793 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:928050..928109 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:932451..932510 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:936717..936776 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:919334..919393 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:933435..933494 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:870754..870813 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:888939..888998 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:734782..734841 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:888445..888504 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>USDA_SNP0050 ID=USDA_SNP0050; Name=USDA_SNP0050; organism=Gossypium hirsutum; type=genetic_marker; length=64bp
TGCAGATTCTCCTACTAGCCAAGTTCCTGAATAC[A/G]GGATTCGGGGT
GATTTCGATATTCC