USDA_SNP0048, USDA_SNP0048 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0048
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018212.1chromosomeCM018212.1:106566777..106566839 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:33189949..33190011 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr1chromosomeAt_chr1:105390861..105390923 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:85934685..85934747 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:115561518..115561580 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:114019283..114019345 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:111693912..111693974 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:108489399..108489461 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A11chromosomeGbar_A11:105016957..105017019 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017620.1chromosomeCM017620.1:114592113..114592175 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:118394788..118394850 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:107106196..107106258 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:118368450..118368512 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:28033254..28033316 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:122789223..122789285 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
B_05chromosomeB_05:48787394..48787456 +Gossypium anomalum (B1) genome NSF_v1n/a
Sequence
>USDA_SNP0048 ID=USDA_SNP0048; Name=USDA_SNP0048; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGATTAGCGCAAGGTCCAGGTAG[C/T]TCCAGTGAGGAAGCTGTTT
CATAGGGTTGCTTTAAG