USDA_SNP0044, USDA_SNP0044 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0044
dbSNP IDN/A
TypeSNP
SNP AllelesA/C
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:18270848..18270910 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:18487193..18487254 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold4304.1supercontigscaffold4304.1:7335..7397 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:18550624..18550686 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:19193304..19193364 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:18687983..18688045 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:19162924..19162986 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:18690905..18690967 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:18452740..18452802 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:18198186..18198248 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:18991307..18991369 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:18628581..18628643 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:18486523..18486585 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:19362102..19362164 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:18275942..18276004 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:18946187..18946249 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10chromosomeChr10:19687820..19687881 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>USDA_SNP0044 ID=USDA_SNP0044; Name=USDA_SNP0044; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGATGGAATAATAGAATAAGAAAAAAATTTAAAAAATATAAAGAAAC
GGAGA[A/C]CGGGAAA