USDA_SNP0040, USDA_SNP0040 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0040
dbSNP IDN/A
TypeSNP
SNP AllelesC/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018214.1chromosomeCM018214.1:2748064..2748126 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:2903905..2903967 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:2120506..2120569 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr7chromosomeDt_chr7:36576850..36576912 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A13chromosomeA13:2752315..2752377 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A13chromosomeGhir_A13:2719794..2719856 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A13chromosomeA13:2850040..2850102 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:2624251..2624313 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:2722338..2722400 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_A13chromosomeGbar_A13:2816891..2816953 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A13chromosomeA13:2736525..2736587 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017622.1chromosomeCM017622.1:2899487..2899549 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017648.1chromosomeCM017648.1:2848788..2848850 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017700.1chromosomeCM017700.1:2557458..2557520 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A13chromosomeA13:2981946..2982008 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:2839166..2839228 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:2736160..2736222 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr13chromosomechr13:2170983..2171046 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr13chromosomeChr13:2313591..2313654 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:1647141..1647204 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:2329234..2329297 -Gossypium lobatum (D7) genome ISU_v1n/a
Sequence
>USDA_SNP0040 ID=USDA_SNP0040; Name=USDA_SNP0040; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGATGAACGACAC[C/G]TTTTTTATATTTTAAGGAAGGAAAATACA
AAAGGTTCATCAAGTTT