USDA_SNP0038, USDA_SNP0038 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0038
dbSNP IDN/A
TypeSNP
SNP AllelesA/G
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:33424058..33424120 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:59872754..59872816 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:29273820..29273880 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:69392214..69392276 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:37365691..37365753 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:1384441..1384503 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr4chromosomeAt_chr4:52128956..52129018 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold2120_A08supercontigscaffold2120_A08:25412..25474 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D08chromosomeD08:31497626..31497688 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:70048502..70048564 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Scaffold209supercontigScaffold209:149952..150014 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:73119154..73119216 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:35402367..35402429 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:72541427..72541489 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:32180894..32180956 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:62212403..62212465 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:35194375..35194437 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:60926897..60926959 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:69375685..69375747 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D08chromosomeD08:34210609..34210671 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:36198301..36198363 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:61737563..61737625 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:35388129..35388191 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:68117492..68117554 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:33509796..33509858 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:61219592..61219654 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:35421827..35421889 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:65739644..65739706 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:78596366..78596428 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:29885344..29885406 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:52140820..52140882 -Gossypium anomalum (B1) genome NSF_v1n/a
chr04chromosomechr04:22914072..22914134 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:20684130..20684192 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:33052086..33052148 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:20260641..20260703 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:16656525..16656587 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr04chromosomeChr04:20179479..20179541 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:62114849..62114910 -Gossypium stocksii (E1) genome NSF_v1n/a
Chr08chromosomeChr08:81017092..81017155 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0038 ID=USDA_SNP0038; Name=USDA_SNP0038; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGATATCTTTGATTTTCTGTTATCCAATTCC[A/G]TCCCCCCTTTT
TTGTAGTTTACCTGTGT