USDA_SNP0031, USDA_SNP0031 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0031
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:3298717..3298779 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:3719352..3719414 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:3067284..3067346 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_06chromosomeKI_06:2780685..2780747 -Gossypioides kirkii genome ISU_v3n/a
tig00004569_CRI-A2_v1.0.a1chromosometig00004569_CRI-A2_v1.0.a1:485028..485090 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:56892450..56892512 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:141525818..141525880 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold3999.1supercontigscaffold3999.1:57908..57970 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3516.1supercontigscaffold3516.1:72178..72240 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:2755985..2756047 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:3118299..3118361 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:3621601..3621663 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:3809437..3809499 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:3450971..3451033 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:3638130..3638192 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:3594941..3595003 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:3716829..3716891 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:3676231..3676293 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Scaffold1681supercontigScaffold1681:59178..59240 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold1549supercontigScaffold1549:16527..16589 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D06chromosomeGbar_D06:3334045..3334107 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:3559853..3559915 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:3351241..3351303 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:3676284..3676346 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:3418112..3418174 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:3649853..3649915 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:3576833..3576895 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:3874366..3874428 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:3408078..3408140 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:3791649..3791711 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:3686716..3686778 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:3799911..3799973 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:3723689..3723751 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:3824546..3824608 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:3083088..3083150 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:93782325..93782387 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:3331663..3331725 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:3245185..3245247 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:2712928..2712990 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:3297175..3297237 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:2509118..2509180 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:2326225..2326287 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:2889746..2889808 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:113101647..113101709 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:2931261..2931323 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:198891054..198891116 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0031 ID=USDA_SNP0031; Name=USDA_SNP0031; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAGCTTCCCTAGAAAGAGCATCACGCTGTG[C/T]CCAGCAGTTCA
TCTCACTTCTGCCTTCC