USDA_SNP0028, USDA_SNP0028 () Gossypium hirsutum

Marker Overview
NameUSDA_SNP0028
dbSNP IDN/A
TypeSNP
SNP AllelesC/T
SpeciesGossypium hirsutum
Publication[view all]
ContactGore, Michael A.
Contact
NameDetails
Gore, Michael A.
Description:Quantitative Genetics; Association Mapping; Genetic Diversity; Stress Tolerance
First name:Michael
Last name:Gore
Title:Research Scientist
Institution:USDA-ARS
Address:21881 North Cardon Lane, Maricopa, Arizona 85238
Country:United States
Email:Michael.Gore@ars.usda.gov
Phone:520 316-6358
Last update:15-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018220.1chromosomeCM018220.1:10518988..10519050 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:10567851..10567913 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:49599291..49599353 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:21951319..21951381 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:10655470..10655532 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:11250465..11250527 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:10906221..10906283 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:11235429..11235491 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:10742336..10742398 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D06chromosomeGbar_D06:10670563..10670625 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:10480363..10480425 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:11221180..11221242 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:10878755..10878817 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:10718155..10718217 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:11375281..11375343 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:10353692..10353754 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:82625600..82625662 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:10904042..10904104 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:9186254..9186316 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:8616423..8616485 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:11182750..11182812 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:7721453..7721515 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:6696598..6696660 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:8129929..8129991 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:99796826..99796888 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:13691288..13691350 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:176370471..176370533 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>USDA_SNP0028 ID=USDA_SNP0028; Name=USDA_SNP0028; organism=Gossypium hirsutum; type=genetic_marker; length=67bp
TGCAGAGAAGGAAA[C/T]AGATGACAGTTTTGAAGAGTTGTCTCCTGAA
AGTGGTGGACAAGTTCC