TAMU_GH_TBr312C24r551, TAMU_GH_TBr312C24r551 (genetic_marker) Gossypium sp.

Marker Overview
NameTAMU_GH_TBr312C24r551
dbSNP IDN/A
SNP Array ID
TAMU_CottonSNP63K:i48326Gh
TypeSNP
SNP AllelesA/G
SpeciesGossypium sp.
Publication[view all]
ContactStelly, David M.
Commentsequence data obtained from TAMU CottonSNP63K Array
Contact
NameDetails
Stelly, David M.
Description:Integrative structural genomics; Cytogenetics; Genetics; Cytogenomics; Radiation hybrid mapping; Chromosome manipulations. ; Wide-cross introgression.; QTL definition. ; Reproductive cytology, genetics and manipulations. ; Fiber cell initiation.
First name:David
Last name:Stelly
Title:Professor
Institution:Texas A&M University
Address:370 Olsen Blvd. , Dept. Soil & Crop Sci., TAMU, College Station, TX 77843-2474
Country:United States
Email:stelly@tamu.edu
Phone:+1 979 845 2745
Fax:+1 979 845 0456
Last update:19-Feb-2007
Libraries
Library NameType
TAMU_CottonSNP63KSNP_chip
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr09chromosomeChr09:9408043..9408043 .Gossypium raimondii (D5) genome JGI_v2_a2.1n/a
CM018219.1chromosomeCM018219.1:9933155..9933255 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:11264018..11264118 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:9431081..9431180 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:35934152..35934251 +Gossypioides kirkii genome ISU_v3n/a
KI_05chromosomeKI_05:8604439..8604538 +Gossypioides kirkii genome ISU_v3n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:11317620..11317720 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_05chromosomeD10_05:51054775..51054875 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:16136191..16136291 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:61012340..61012440 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:45801882..45801982 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:9884661..9884761 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:10364025..10364125 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:10354454..10354554 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:11438947..11439047 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:10090232..10090332 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:11080948..11081048 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:10182471..10182571 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:11469192..11469292 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:10066296..10066396 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:11677610..11677710 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:10282619..10282719 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:10847871..10847971 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:10324452..10324552 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:11462181..11462281 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:10216276..10216376 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:11326746..11326846 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:10556454..10556554 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:11546442..11546542 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:10171469..10171569 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:11190911..11191011 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:10416534..10416634 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:11687723..11687823 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:12059507..12059607 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:11156499..11156599 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:9473892..9473991 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr09chromosomechr09:8967484..8967583 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:8789187..8789287 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:10130419..10130519 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:8851830..8851930 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:7457430..7457530 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr09chromosomeChr09:8639162..8639262 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:12149177..12149277 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr13chromosomeChr13:186162960..186163060 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Phytogen 72 x Stoneville 474, consbin (2017)AD_ch05_At.05N/A178.54SNPi48326GhView
2HS-46 x MARCABUCAG8US-1-88, RIL (2016)AD_ch05_At.05N/A65.63i48326GhView
30-153 x sGK9708, RIL (2017)AD_ch05_At.05N/A36.84i48326GhView
43-79 x TM-1, F2 (2015 SNP)AD_ch05_At.05N/A158.21i48326GhView
5Phytogen 72 x Stoneville 474, F2 (2015 SNP)AD_ch05_At.05N/A164.2i48326GhView
Sequence
>TAMU_GH_TBr312C24r551 ID=TAMU_GH_TBr312C24r551; Name=TAMU_GH_TBr312C24r551; organism=Gossypium sp.; type=genetic_marker; length=105bp
CTTCATGTTGTTTTCTTCCTTGTTTGTTTCATATTATCTATGCTAGGTAG
[A/G]TATTATTTTTAACCATTTTAGGGATGTAAATCTTCTTTGGCTTGT
GATCG